PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G186700.1
Common NamePHAVU_001G186700g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 1027aa    MW: 112550 Da    PI: 7.4522
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G186700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017879901123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C++Cg +F++ ++++rH+  H
  Phvul.001G186700.1 879 HHCKICGIRFKQEEQYQRHLEWH 901
                         68*****************9887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484646.02E-3774202IPR008942ENTH/VHS
PROSITE profilePS5139136.33674202IPR006569CID domain
Gene3DG3DSA:1.25.40.905.1E-4375197IPR008942ENTH/VHS
SMARTSM005822.1E-4377199IPR006569CID domain
CDDcd035624.60E-3879189No hitNo description
PfamPF048182.8E-8130183IPR006903RNA polymerase II-binding domain
PROSITE profilePS501579.058879906IPR007087Zinc finger, C2H2
PROSITE patternPS000280881901IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1027 aa     Download sequence    Send to blast
MNMESTRRSL DRSREPGPKK PRLIEELSAR QLPQRQQGSG AVASGVSARV RVNDRDSESS  60
DLGRGGGYHP QSPPHDELVA QYRTALAELT FNSKPIITNL TIIAGENQSA AKAIAATVCA  120
NIIEVPSDQK LPSLYLLDSI VKNIGRDYIK YFAVRLPEVF CKAYRQVDPI VHSSMKHLFG  180
TWKGVFPPQC LQMIEKELGF TPAVNGSASV SATVRSDLQS QRPPHSIHVN PKYLERQRLQ  240
QSSTSKGVVD DMTGALLNSN EESERPERVL GASRPWLDPR INMLNNQHAH RDAFNDSVPE  300
KSIDGSFGGS QYGSGISSNL VSGAGRTGTK LIDLGHEKTW FKTDGSEAET IPGQKNGFSL  360
KRSFSNREAP KSINLEAHRQ PRQSITNIRN NVMSGNWKNS EEEEFTWDEM NTGLTDHGPN  420
VSSNLSTDSW MTDDENLEGE DHLHILRPYG AKVDREISTV KKQLPGFGGH PPSSWQLQKH  480
HTIDKLNLKP GYSDGFVSTI SGLPANANSL PVKKGNQSFT SKAVVGMAKI VGQQFDGEIE  540
SPSGQSPLQR QSPSLPGTAY HPHSMQNLPE QEMPQNIRTS QFSGGPTSQH IRDRSPTLHP  600
IVQVGNMRRT QEKDMQGPLS SATKLQQQQL DFSQTEVSAK TKLPQSKTSL TKEVSEQSTK  660
NNLSSAAVKS GIIPKKSITS NLDPRKHLSK SGVQLPRSGR SSPTTIISSG SAVASPSLLD  720
PLHKDSSSVP KKPQGKAGQP PQKLSTQPPA SSNLNAAKNN VNPIANLLSS LVAKGLISAE  780
TESPTMVPSE PSEVLKGSKD KAANISTSSS IPVTSVSDSA AVPVSSARDE VDAATKSSLP  840
SAQSTSTKIR NLIGFDFKPN VIREYHEPVI RELLDDFPHH CKICGIRFKQ EEQYQRHLEW  900
HATREHGPIK VSRSWYPKSG DWIAGKVEEY SSEFEFADSA VVDNQETDSS QLDMMIRADE  960
NQCLCVLCGE LFEDVYCEER NEWMFKGAVN MNYSDINSEM ESRNAGPIIH AKCLSENSIV  1020
TNLDND*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1sz9_A2e-15751823112PCF11 protein
1sz9_B2e-15751823112PCF11 protein
1sz9_C2e-15751823112PCF11 protein
1sza_A2e-15751823112PCF11 protein
1sza_B2e-15751823112PCF11 protein
1sza_C2e-15751823112PCF11 protein
2bf0_X2e-15751828117PCF11
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162855.10.0hypothetical protein PHAVU_001G186700g
TrEMBLV7CXK70.0V7CXK7_PHAVU; Uncharacterized protein
STRINGGLYMA03G34910.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF436933